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Computational Systems Biology with BioSym
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Presentation of research results achieved by the participants of the biological modeling course 2008
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A minisymposium offered by the Bio-294 students on Wednesday, March 12, 8.30 to 18 in Seminar room 34-J-02, at the Irchel campus
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Students and guests are welcome
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print program (pdf) |
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The symposium illustrates results which were obtained during a three week training course with biology, biochemistry and mathematics students. Student training and research was carried out with Matlab and its toolboxes in the Systems Biology Learning Environment that was developed in the course of an SVC (Swiss Virtual Campus) project by the Swiss BioSym team. Details about the BioSym course are available on OLAT. |
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Lectures last 30 minutes, discussion time included |
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Conveners introduce the speakers and the topic and they lead the discussion |
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08.30 |
Welcome and Introduction |
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Kurt Hanselmann |
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08.35 |
Session 1: Physiology and biochemistry
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CONVENERS:
Nadine Schmid
Dominik Possner
Boris Begemann |
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08.35 |
L 1: Direction selectivity in the retina |
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Janine Hall |
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09.05 |
L 2: Regulation of the hypothalamic-pituitary-adrenal system |
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Ronald Egli |
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09.35 |
L 3: Drug delivery across the blood-brain barrier |
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Victoria Makrides |
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10.05 |
L 4: Direct protein evolution |
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Fabio Parmeggiani |
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10.35 |
Intermission |
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10.50 |
Session 2: Epidemics and Genetics
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CONVENERS:
Markus Schlegel
Esther Kohler
Mirjam von Rütte
Claudio Bozzuto |
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10.50 |
L 5: Stochastic epidemic SEIR model with control intervention applied to Ebola |
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Jahel Hämmerli |
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11.20 |
L 6: Dengue fever: A vaccination model with antibody-dependent enhancement |
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Titu Staubli |
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11.50 |
L 7: Wolbachia spp.: Incompatibility-inducing microbes in insects |
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Raphael Sieber |
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12.20 |
L 8: Can insertion sequences invade bacterial biofilms? |
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Manuel Bichsel |
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12.50 |
Lunch Break |
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13.20 |
Session 3: Regulation of cellular processes
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CONVENERS:
Victoria Makrides
Janine Hall
Ronald Egli |
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13.20 |
L 9: Quorum sensing networks in Pseudomonas aeruginosa |
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Nadine Schmid |
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13.50 |
L 10: Regulatory cascade for caspase-3 activity |
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Dominik Possner |
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14.20 |
L 11: Cell cycle control in budding yeast |
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Boris Begemann |
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14.50 |
Intermission |
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15.10 |
Session 4: Ecology and ecosystems
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CONVENERS:
Titu Staubli
Jahel Hämmerli
Raphael Sieber
Manuel Bichsel |
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15.10 |
L 12: Effects of iron fertilization on the marine food web and nutrient cycles |
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Markus Schlegel |
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15.40 |
L 13: Nitrogen cycling in the lower trophic level of a north pacific marine ecosystem |
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Esther Kohler |
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16.10 |
L 14: Marine protected areas: Can they lead to sustainable fisheries |
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Mirjam von Rütte |
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16.40 |
L 15: Allee effects in Polar Bears |
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Claudio Bozzuto |
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17.10 |
Summary and conclusions |
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Kurt Hanselmann |
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17.30 |
Course assessment |
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ALL |
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17.45 |
End of symposium |
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